The Seed - Biosecurity Innovation Hub

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Welcome to The Seed, our biosecurity innovation hub where you can learn more about exciting developments in the biosecurity space.

This initiative was an outcome of the inaugural Biosecurity Innovation Exchange 2018.

Each issue will feature stories about exciting initiatives and profiles of people who are making great strides in innovation.

You can also plant your ideas in our ideas patch and subscribe so you don’t miss out on the latest news.

Welcome to The Seed, our biosecurity innovation hub where you can learn more about exciting developments in the biosecurity space.

This initiative was an outcome of the inaugural Biosecurity Innovation Exchange 2018.

Each issue will feature stories about exciting initiatives and profiles of people who are making great strides in innovation.

You can also plant your ideas in our ideas patch and subscribe so you don’t miss out on the latest news.

  • Biosecurity Innovation Program Expression of Interest 2022-23

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    Do you have an interest in Biosecurity and a great idea to contribute to the sector?

    The Australian Government’s Biosecurity Innovation Program might be the opportunity you’re looking for.

    The Biosecurity Innovation Program will fund up to $5 million in projects exploring innovative technologies and approaches to enhance Australia’s national biosecurity system. The projects will help to manage emerging biosecurity challenges and risks into the future.

    The program will focus on supporting ideas that benefit Australia’s agriculture sector, importers, exporters, state and territory governments, business innovators, international partners, and the Australian public. It will help Australia maintain our favourable pest and disease status, and our access to export markets.

    The 5 key focus areas are:

    1. Automation
    2. Communication and collaboration
    3. Data and intelligence
    4. Risk analysis
    5. Surveillance, diagnostics and screening

    The Department of Agriculture, Water and the Environment wants to work with you to identify bold new ideas to support the long-term effectiveness and sustainability of Australia’s biosecurity system. We need to modernise our systems to keep pace with a changing world. Through the program, we are bringing your ideas to life.

    The application process has 2 key stages. Start by submitting an Expression of Interest (EOI). Tell us about your innovative idea and how you plan to put it into action. You can express interest in any or all of the 5 key focus areas.

    We will then review submissions. If you are shortlisted, you will be invited to participate in the second stage to discuss your idea in more detail with us.

    If successful,, we’ll get in touch and organise a contract to formalise the agreement. We’ll then continue to work together to deliver your project!

    Interested? Here’s how to get involved.

    Read the project guidelines and important information to make your application a success. It’s all available on the Biosecurity Innovation Program Ideas portal. Then get writing! EOI applications are open until 3 December 2021.

    Your EOI will be assessed by a panel of innovation experts over 8 weeks Once reviewed, we’ll be in touch to let you know the outcome.

    We know along the way you may have questions. The Biosecurity Innovation Program support team are on hand to help you. Email us at biosecurity.innovation@awe.gov.au

    By working together, we will be better placed to build a smarter, stronger, and more sustainable national biosecurity system.

    We look forward to your application.

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  • Innovation on the Reef

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    Reef Life Explorer


    The vulnerability of reefs to environmental and human pressures makes them among the most threatened ecosystems on Earth. To ensure reefs thrive now and into the future, we must better track how marine life responds to changing conditions. To do this, we look for ecological indicators that provide meaningful measures of change.


    Reef Life Survey (RLS) provides an innovative model for ecological monitoring by training and supporting committed volunteers in underwater visual census methods. This allows for cost-effective data gathering at larger scales.

    RLS differs from most other citizen science initiatives in its emphasis on rigorous training and data quality, selectively involving the most skilled and committed members. Volunteers participate mainly because they appreciate the close relationship with scientists, other divers, and managers, and because they can see their efforts directly contributing to environmental outcomes.

    RLS focuses on the provision or objective independent data, which are then often used for a broad range of scientific, environmental management, education, and even artistic purposes.

    One use of RLS data is the Reef Life Explorer (RLE), an immersive interactive platform that tracks global reef health. Using data from over 30 years and 52 countries, the RLE is a powerful tool allowing the public, scientists, management agencies and decision makers to visualise the changes occurring to thousands of reefs systems over time.

    Just as blood pressure and body temperature reflect our own health, the indicators used in the RLE reflect reef health. From habitat loss and sea urchin densities to fish species change and rising ocean temperatures, these indicators distil complex relationships in the marine environment, allowing researchers to explore reef condition trends over time.


    RLS works closely with Australian management agencies, scheduling annual events at core monitoring sites Australia-wide. RLS was initiated as a three-year pilot program (2007–10) supported by the Australian Government through the Commonwealth Environment Research Facilities program, and hosted by the University of Tasmania. Now, RLS is a not-for-profit incorporated association which boasts the largest standardised, diver-collected, marine biodiversity datasets in the world.

    Learn more about RLS and how you can get involved.


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  • The Plant Innovation Centre at Post-Entry Quarantine (PIC@PEQ)

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    aThe Plant Innovation Centre at Post-Entry Quarantine (PIC@PEQ)

    The Plant Innovation Centre at Post-Entry Quarantine (PIC@PEQ), part of the Department of Agriculture, Water and the Environment, is a team of dedicated scientists who:

    • focus on developing in-house R&D capability to conduct operational trials to improve business services
    • partner with the external scientific community to identify, develop, optimise, validate and deliver project outcomes
    • develop collaborative links with the education sector to enhance the departments visibility as an employer of choice for high-performing graduates.

    Since 2017, PIC@PEQ have worked closely with a range of external partners including universities, state governments and biosecurity treatment providers, to champion new and innovative initiatives to improve business outcomes ­– particularly in relation to cutting-edge diagnostic technologies and novel treatment strategies.

    One such project is ‘High Throughput Sequencing (HTS) for high-risk plant diagnostics in PEQ’, a collaborative effort between PIC@PEQ, Science and Surveillance Group, Queensland University of Technology, Agriculture Victoria, Hort Innovation and the New Zealand Ministry of Primary Industries.

    Mark Whattam, the Director and founder of PIC@PEQ, said that HTS will be a game-changer for how we detect and identify viruses in high-risk plants imported into Australia.

    “At present, we run dozens of individual tests for viruses which is expensive and time-consuming,” Mr Whattam said.

    “HTS will replace all of these with a single test. It will result in improved detections, cheaper imports, and faster clearance times with less resources.”

    HTS is scheduled for implementation in late 2022, with the necessary policy settings currently under development via a divisional working group chaired by David Dall, the department’s head of Plant Science and Risk Assessment.

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  • Marine ROVs

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    ROVs can be used to detect pests that threaten Australia’s marine environments and industries

    Marine pests, such as the Asian green mussel, can hitch a ride to Australia on ships or other vessels. Once established, marine pests have impacts on Australia’s unique environment, economy and way or life. We need to constantly be on the lookout for marine pests, to stop their introduction and spread.

    Remotely Operated underwater Vehicles (ROVs) are emerging as a powerful new tool to detect introduced marine pests. These underwater drones can search for pests on the underside of ships, port infrastructure or in the natural environment.

    The Department of Agriculture, Water and the Environment has funded the modification of ROVs to make them more powerful surveillance tools, and trained biosecurity personnel in their use. Features such as high-resolution cameras, live streaming of footage, sonar and sample collection tools have been tested and a report outlining the results is now available.

    Training videos and documents will also be published on the marine pest website late this year and will be used to support the use of ROVs for biosecurity surveillance.

    ROVs are already being used for biosecurity surveillance around Australia and interest is expected to grow as new features are developed, experience in their use is gained and prices continue to drop.

    Check out the video of ROVs in action, or find out more about developments in marine biosecurity surveillance using ROVs

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  • Keeping our waters safe by design

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    Eco-engineering in action in Port Phillip Bay, Victoria, Australia. Photo by John Turnbull

    New research is looking into using design principles to reduce marine pests. These pests threaten our unique coastal environments, industries, and social amenities.

    The potential damage from marine pests is severe and they threaten our biosecurity. It is cheaper and more effective to prevent pests spreading than to remove or manage the pest once it is here.

    Manmade structures like wharfs and seawalls can act as steppingstones for marine pests to establish and spread. Principle Researcher Dr Nina Schaefer sees eco-engineering as one answer to this big problem.

    Eco-engineering incorporates ecological principles in the design of marine infrastructure. This improves the management of coastal environments,’ says Dr Nina Schaefer.

    ‘Our research indicates that we may be able to reduce the prevalence of certain marine pests by changing design factors. These factors include smoothness or brightness of underwater structures.’

    ‘The design changes also enhance native species use of infrastructure,’ Dr Schaefer said.

    The project will look at how light influences marine life colonising underwater surfaces. Designers and users of marine infrastructure will receive the research findings. This will encourage the uptake of eco-engineering in marine development projects.

    The research report and webinars series explain the initial findings and research plans.



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  • Plant Biosecurity expert wins Science & Innovation award

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    Dr Kim Ritman Award for Science & Innovation winner is plant biosecurity expert Professor Brendan Rodoni

    Professor Brendan Rodoni is the inaugural winner of the Dr. Kim Ritman Award for Science and Innovation. The win is recognition of his efforts to improve Australia’s capability for managing plant biosecurity risks.


    Professor Rodoni is a strong advocate for biosecurity research. He has made a substantial contribution to plant virology and bacteriology research over his 35-year career.

    Professor Rodoni was involved in the national response to the reported detection of fire blight in Melbourne in 1997. This report resulted in one of the most intense survey and diagnostic programs in the history of plant industries in Australia.

    In 2010, he was involved in the development of advanced molecular diagnostic methods for the detection of plant viruses. This resulted in the adoption of new polymerase chain reaction tests for post-entry quarantine operations.

    In 2012, he investigated new approaches for diagnosing high-priority exotic plant bacterial pathogens. This led to improvements in diagnostic capability for Australia, New Zealand and the United States. This improved detections of fire blight, zebra chip, citrus canker and kiwi fruit blight.

    Prof Rodoni has led innovative work in emerging genomics technologies and field-deployable detection systems.

    Since 2018 he has worked on a national high-throughput sequencing (HTS) project. This includes his advocacy role in developing a framework and guidelines for using HTS.

    He is currently engaged in a 5-year industry-funded surveillance project that will change how airborne emergency plant pests are detected.

    Prof Rodoni’s has a strong commitment to delivering outcomes for government, industry and the community. His efforts have contributed significantly to innovations in biosecurity.

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  • Top seed in biosecurity innovation

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    Insect under low energy x-ray

    Currently, seeds make up around 80% of all detections at our mail gateway facilities. Everyday hundreds of seed packets are intercepted by biosecurity officers.


    Seeds come in varying shapes and are often small and low density. Current detection technologies have challenges in identifying seeds at our border.

    This is being addressed with an innovative technical solution to reduce biosecurity risk.

    The technology uses real-time video imagery and a computer algorithm to automatically identify seed packets and then uses a low-energy, high resolution x-ray to confirm the presence of seeds inside the packet.

    Project director, Jessica Mitchell, explains that high energy x-ray cannot be absorbed by small items so will generally not detect the presence of seeds.

    ‘Unlike high energy x-ray, low energy x-ray is able to be absorbed by smaller items such as insects and seeds,’ says Ms. Mitchell.

    ’Low-energy beams are not as powerful and are able to show an incredibly defined image, perfect for detecting small hidden seeds.’

    Funded by the Biosecurity Innovation Program, this world-first, proof of concept trial began in May 2020. It has already proven successful, demonstrating that computer algorithms and low energy x-ray is an effective way to identify and confirm the presence of seeds.

    The project team is now preparing for phase 2. This involves operational trials and integrating this technology into current processes. Watch this space for future updates!

    DAWE is working collaboratively in partnership with Rapiscan to develop this technology.

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  • Any-fin is possible with citizen science

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    Bruvnet SoftwareWritten by Compliance division

    As part of Innovation Month 2020, the Supervising Scientist Branch ran an online fishing competition. The goal was to train their new artificial intelligence model, BRUVNet.

    The innovative model helps to automate the identification of fish species in Kakadu National Park billabongs. This involves counting and labelling fish from video footage. The challenge is that BRUVNet needs a significant dataset of labelled fish imagery. A large dataset will allow enough accuracy for regular monitoring.

    The challenge saw many individuals contribute to labelling the fish. It was Brooke Batham, Brooke from the department’s Innovation Hub who succeeded in labelling the most. A staggering 943 fish!

    ‘I think it's so important to get involved in citizen science projects. I always love using the skills I learnt from my marine biology background, and I'm so glad I could help out! Brooke said.

    ‘This gives me the opportunity to use the skills I have learnt to help protect Kakadu without ever leaving Canberra.’

    Even though the challenge has ended, you can still help by taking part online. This is an opportunity to contribute to the protection of Kakadu National Park.


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  • Submit your ideas for the Biosecurity Innovation Program

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    We want to hear your innovative ideas to enhance Australia’s national biosecurity system to manage emerging biosecurity challenges and risks, with new project funding now available through the Biosecurity Innovation Program 2021-22!

    The challenge

    Biosecurity protects Australian livelihoods and is vital to strengthening and supporting our environment and economy, including tourism, trade, and agriculture. It underpins many aspects of our way of life.

    The Australian biosecurity landscape is changing quickly and growing in complexity. We are operating in a 24-hour business context, facing increasing volumes of international trade. We are facing increasingly complex global supply chains and changes in the environment, including climate change.

    Globalisation, complexity of international supply chains and changes to the Australian operating environment including the COVID-19 pandemic are making biosecurity risk management more challenging.

    What we are looking for

    Industry plays an essential role in safeguarding Australia’s biosecurity. We want to collaborate with innovators from the business sector, universities, and domestic and international research entities.

    Together, we want to identify bold new ideas to support the long-term effectiveness and sustainability of Australia’s biosecurity system.


    Tell us your ideas for technologies and approaches that will contribute to a sustainable and effective national Australian biosecurity system, and ways to modernise our current biosecurity risk management practices.

    The program will provide financial support for projects that could improve:

    • biosecurity screening of goods and passengers
    • biosecurity risk detection — for example, drone surveillance, artificial intelligence, robotics, next generation sequencing and new biological controls
    • the effectiveness and efficiency of our national biosecurity system in a changing environment.

    How to get involved

    Applications for 2021-22 financial year funding round opened on 9 November 2020 with submissions closing on 12 February 2021.

    Send a short description of your idea to the Biosecurity Innovation Program team (100-300 words) and we will be in touch.

    Contact the team early so they can connect you with a project sponsor. The sponsor will champion your idea within the department and work with you to develop your project proposal, including to ensure your idea is aligned to the department’s priorities and the program objectives.

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  • eDNA project finds bad guys with the help of “The Good Guys”

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    Article written by Compliance Division

    Dr. Alejandro collecting dirt samples from vaccum cleaners used by the biosecurity officers responding to the Khapra beetle detection at the Good Guys (Image Courtesy: Dr. Thomas Wallenius, DAWE).

    Earlier on The Seed, we reported on the success of using eDNA to detect fish pests in the water. This time we move our focus to land to detect the notorious Khapra beetle from dirt samples.

    World-first e-DNA detection

    Khapra beetle (Trogoderma granarium) is a listed national priority pest infecting grains, seeds, rice and dried food. It can cause huge losses to our economy if it becomes established. In August 2020, detections were made at two The Good Guys retail outlets in Canberra. This led to a rapid biosecurity eradication response by the department.

    Our own entomologist, Dr Thomas Wallenius, teamed up with Dr. Alejandro Trujillo-Gonzalez, the lead researcher in the project. Together, they examined the area for the presence of Kharpa beetle and recovered filters from vacuum cleaners used at the site.

    Khapra DNA was identified from the dirt samples taken from the vacuum cleaners, a world first detection using eDNA in biosecurity. The real-time detection was made in under 90 minutes and then validated using the Biomeme Franklin Thermocycler, a portable device that is being tested in the project.

    Dr. Uday Divi , one of the project leaders at DAWE, said ‘This is a breakthrough in developing a targeted, portable, cheap and accurate tool for biosecurity officers. It allows them to detect a range of high risk pests, diseases and invasive species that could be entering the country’.

    Further applications

    While the quest continues for the application of eDNA across a range of biosecurity pest and disease pathways. The enormous potential for the technology across a variety of applications including environment and biodiversity assessments has been realised.

    Some of the current project priorities include developing a quick and accurate test to detect exotic invasive ants, myrtle rust, and monitoring for white-nose disease in bats from soil samples. This work is being done in collaboration with the office of the Chief Environmental Biosecurity Officer.

    As the project expands, more priority species including honeybees and seed viruses are expected to be added for testing with the technology. The project aims to develop a single and multi-species detection assays for faster, cheaper, and more reliable testing that can be implemented across our biosecurity system.

    Progress update

    So far, we have shown that this technology works to make rapid and accurate detections in the field. We have made immense progress, but the following questions are still being addressed:

    • Will it work?
    • Will it be more efficient?
    • Will it improve the service we offer our clients?
    • Will it be better than what we are doing now?

    Next time on The Seed, we hope to report on its application in Australian biosecurity operations such as container screening and environmental surveillance.




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